Table 2

The MATT alignment of three structures of DNA polymerase I indifferent conformations
480 490 500 510 520
1KTQ GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRS-------TSAA----VLEALREAH
2KTQ GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH (a)
3KTQ GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH
-H1----- -H2---
640 650 660 670 680 690
1KTQ EGRDIHTETASWMFGVPREAV---------------D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS
2KTQ EGRDIHTETAS----------WMFGVPREAV-----D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS (b)
3KTQ EGRDIHTETAS--------------------WMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS
----N----- ----O------- --O1-- --O2----------
710 740
1KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
2KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF (c)
3KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
-P------ -10 -11 -------Q------------------------

Shealy and Valafar

Shealy and Valafar BMC Bioinformatics 2012 13:105   doi:10.1186/1471-2105-13-105

Open Data