Table 2 |
||||||
| The MATT alignment of three structures of DNA polymerase I indifferent conformations | ||||||
| 480 | 490 | 500 | 510 | 520 | ||
| 1KTQ | GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRS-------TSAA----VLEALREAH | |||||
| 2KTQ | GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH | (a) | ||||
| 3KTQ | GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH | |||||
| -H1----- | -H2--- | |||||
| 640 | 650 | 660 | 670 | 680 | 690 | |
| 1KTQ | EGRDIHTETASWMFGVPREAV---------------D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | |||||
| 2KTQ | EGRDIHTETAS----------WMFGVPREAV-----D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | (b) | ||||
| 3KTQ | EGRDIHTETAS--------------------WMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | |||||
| ----N----- | ----O------- | --O1-- | --O2---------- | |||
| 710 | 740 | |||||
| 1KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | |||||
| 2KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | (c) | ||||
| 3KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | |||||
| -P------ | -10 | -11 | -------Q------------------------ | |||
Shealy and Valafar BMC Bioinformatics 2012 13:105 doi:10.1186/1471-2105-13-105
