Table 3

Comparison of inference algorithms

Comparison


Attribute

LBP

GBP

MF

TRBP


Accuracy of χ1

80.07

80.03

79.54

76.45

Accuracy of χ1+2

60.78

60.72

60.33

55.58

Average rank of χ1

1.50

1.51

1.54

1.59

Average rank of χ1+2

2.23

2.25

2.33

2.45

Average execution time (in seconds)

29.99

63.19

14.17

189.94


Comparison of the average accuracy for side-chain prediction, the average rank of the first correct rotamers, and the average running time for loopy belief propagation (LBP), generalized belief propagation (GBP), mean field approximation (MF), and tree re-weighted belief propagation (TRBP).

Bhuyan and Gao BMC Bioinformatics 2011 12(Suppl 14):S10   doi:10.1186/1471-2105-12-S14-S10

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