Table 4

Detected EEJs from CLSTN1.

Gene name

Accession

EEJ pattern

Mapping pattern

Read ID

CN

MM

seq


CLSTN1

NM_001009566

19:6-8

14 + 5

NR12

32

0

cctgggtggcaagggtgcg

CLSTN1

NM_001009566

19:6-8

14 + 5

NR541

6

1

cctgggtggcatgggtgcg

CLSTN1

NM_001009566

19:6-8

14 + 5

NR3652

4

1

cctgggtggcaaggatgcg

CLSTN1

NM_014944

18:5-7

14 + 5

NR548

32

0

cctgggtggcaagggtgcg

CLSTN1

NM_014944

18:5-7

14 + 5

NR695

6

1

cctgggtggcatgggtgcg

CLSTN1

NM_014944

18:5-7

14 + 5

NR47

4

1

cctgggtggcaaggatgcg


NM_001009566 and NM_014944 are splicing isoforms of CLSTN1. The EEJ (19:6-8) from NM_001009566 is identical to the EEJ (18:5-7) from NM_014944.

Li et al. BMC Bioinformatics 2011 12(Suppl 1):S9   doi:10.1186/1471-2105-12-S1-S9

Open Data