Table 3

Summary of EEJs detected from L2 un-mappable reads.

EEJ category

Continuous

Discrete


CN

18,228 (95)

17,687 (1,209)

# Transcript

2,038 (14)

700 (69)

# EEJ

2,986 (14)

1,269 (83)

# EST

581,260 (4,746)

34,469 (1,642)


The digits in parenthesis denote the values when no mismatch was allowed in the mapping procedure. Continuous EEJ dominated over discrete ones in terms of read copy number and EST abundance.

Li et al. BMC Bioinformatics 2011 12(Suppl 1):S9   doi:10.1186/1471-2105-12-S1-S9

Open Data