Additional File 3.
Node selection report for Molecular Function. A report of the fine-grained details about how sensitivity and specificity were calculated for Molecular Function. Column A (Allowed Distance) reports the allowable distance from the correct GO term that can be reported as a true positive. Column B (PROSITE ID) reports the PROSITE database identifier that provided these results. Column C reports the PROSITE pattern record for this PROSITE ID, and column D reports the length of the PROSITE pattern. Column E (All Selected) reports the total number of GO terms that were selected by our selection algorithm. Column F-I (True Positives, True Negatives, False Positives, False Negatives) reports the total number of GO terms selected that match the criteria for true positive, false positive, true negative or false negative. Columns J and K (Specificity and Sensitivity) report the calculated specificity and sensitivity for the data in the row.
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Bristow et al. BMC Bioinformatics 2011 12:379 doi:10.1186/1471-2105-12-379