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DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking

Irina Tuszynska1 and Janusz M Bujnicki12*

Author Affiliations

1 Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland

2 Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, ul. Umultowska 89, PL-61-614 Poznan, Poland

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BMC Bioinformatics 2011, 12:348  doi:10.1186/1471-2105-12-348

Published: 18 August 2011

Additional files

Additional file 1:

Additional_figures_and_table.pdf. Files and tables with additional data illustrating the details of implementation, ordered according to their appearance in the text.

Format: PDF Size: 983KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Energy_DARS.pdf. Energy for each distance, angle, and site bin, for each pair wise interaction in the DARS-RNP potential.

Format: PDF Size: 2.5MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Energy_QUASI.pdf. Energy for each distance, angle, and site bin, for each pair wise interaction in the QUASI-RNP potential.

Format: PDF Size: 2.3MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Observed.pdf. Observed number of contacts in each distance, angle, and site bin, for each pair wise interaction.

Format: PDF Size: 2.2MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 5:

Expected_DARS.pdf. Expected number of contacts in each distance, angle, and site bin, for each pair wise interaction in the DARS-RNP potential.

Format: PDF Size: 2.3MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 6:

Expected_QUASI.pdf. Expected number of contacts in each distance, angle, and site bin, for each pair wise interaction in the QUASI-RNP potential.

Format: PDF Size: 2.2MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data