Table 1

Memory usage and Time for whole genome data

Program

Time (hrs)

Memory (GB)


BFCounter

23.82

42

Jellyfish

8.03

71

Naive*

>26.38

>128


Memory and time usage for the 1000 Genomes data set (40-fold coverage of individual NA19240). *The naive version ran out of memory after processing 84.7% of the reads.

Melsted and Pritchard BMC Bioinformatics 2011 12:333   doi:10.1186/1471-2105-12-333

Open Data