Table 1 |
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Reactions and Propensity Functions for the Stochastic lac Operon Model |
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|
Reaction |
Propensity Function1, 2, 3 |
|
|
|
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|
(1-1) |
|
|
|
(1-2) |
|
|
|
(1-3) |
|
|
|
(1-4) |
|
|
|
(1-5) |
|
|
|
(1-6) |
|
|
|
(1-7) |
|
|
|
(1-8) |
|
|
|
(1-9) |
|
|
|
(1-10) |
|
|
|
(1-11) |
|
|
|
(1-12) |
|
|
|
(1-13) |
|
|
|
(1-14) |
|
|
|
(1-15) |
|
|
|
(1-16) |
|
|
|
(1-17) |
|
|
|
(1-18) |
|
|
|
(1-19) |
|
|
|
(1-20) |
|
|
|
(1-21) |
|
|
|
(1-22) |
|
|
|
(1-23) |
|
|
|
(1-24) |
|
|
|
(1-25) |
|
|
|
|
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|
1 Variables without brackets denote number of molecules of the corresponding species. 2 All propensity functions have units of min-1. 3 Avogadro's number: NA = 6.0221367ยท1014 nmol-1. |
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|
Stamatakis and Zygourakis BMC Bioinformatics 2011 12:301 doi:10.1186/1471-2105-12-301 |
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