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GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data

Marie E Fahey12, Melanie J Bennett2, Cathal Mahon13, Stefanie Jäger1, Lars Pache4, Dhiraj Kumar5, Alex Shapiro6, Kanury Rao5, Sumit K Chanda4, Charles S Craik3, Alan D Frankel2* and Nevan J Krogan1*

Author Affiliations

1 Department of Cellular and Molecular Pharmacology, University of California San Francisco, 1700 4th Street, San Francisco, 94158 USA

2 Department of Biochemistry and Biophysics, University of California San Francisco, 600 16th Street, San Francisco, 94158 USA

3 Department of Pharmaceutical Chemistry, University of California San Francisco, 600 16th Street, San Francisco, 94158 USA

4 Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, 92037 USA

5 Immunology Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Marg, New Delhi 110 067, India

6 TouchGraph LLC, 306 W. 92nd Street #3F, New York, 10025 USA

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BMC Bioinformatics 2011, 12:298  doi:10.1186/1471-2105-12-298

Published: 22 July 2011

Additional files

Additional file 1:

Published and converted identifiers for all seven HIV screens.

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Additional file 2:

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Additional file 3:

Dataset of 222 human complexes derived from CORUM by clustering and details of manual refinement of complexes.

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Additional file 4:

Complexes and subunits identified by RNAi studies.

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Additional file 5:

Complexes and subunits identified by proteomic profiling studies.

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Additional file 6:

Comparison of broad expression level of Mtb and HIV screens.

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Additional file 7:

RNAi-mediated depletion of MED30 blocks early steps of replication of a VSV-G pseudotyped HIV luciferase virus.

Format: DOC Size: 260KB Download file

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