Table 4

Concordance of detected CNV segments using PennCNV and CRLMM/VanillaIce for 1,266 subjects that passed PennCNV and CRLMM QC metrics

Quantile


0% (Min)

25%

50% (Median)

75%

100% (Max)


Duplications


Concordance

0.0

26.3

47.9

68.2

100.0


PennCNV only

0.0

24.7

44.9

67.9

100.0


CRLMM/VanillaIce only

0.0

0.3

2.1

7.1

100.0



Deletions


Concordance

0.4

37.5

51.5

65.5

95.8


PennCNV only

0.0

23.0

37.5

53.6

94.0


CRLMM/VanillaIce only

0.0

2.3

5.0

11.8

96.7


Eckel-Passow et al. BMC Bioinformatics 2011 12:220   doi:10.1186/1471-2105-12-220

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