Table 4 |
|||||
|
Concordance of detected CNV segments using PennCNV and CRLMM/VanillaIce for 1,266 subjects that passed PennCNV and CRLMM QC metrics |
|||||
|
Quantile |
|||||
|
|
|||||
|
0% (Min) |
25% |
50% (Median) |
75% |
100% (Max) |
|
|
|
|||||
|
Duplications |
|||||
|
|
|||||
|
Concordance |
0.0 |
26.3 |
47.9 |
68.2 |
100.0 |
|
|
|||||
|
PennCNV only |
0.0 |
24.7 |
44.9 |
67.9 |
100.0 |
|
|
|||||
|
CRLMM/VanillaIce only |
0.0 |
0.3 |
2.1 |
7.1 |
100.0 |
|
|
|||||
|
|
|||||
|
Deletions |
|||||
|
|
|||||
|
Concordance |
0.4 |
37.5 |
51.5 |
65.5 |
95.8 |
|
|
|||||
|
PennCNV only |
0.0 |
23.0 |
37.5 |
53.6 |
94.0 |
|
|
|||||
|
CRLMM/VanillaIce only |
0.0 |
2.3 |
5.0 |
11.8 |
96.7 |
|
|
|||||
|
Eckel-Passow et al. BMC Bioinformatics 2011 12:220 doi:10.1186/1471-2105-12-220 |
|||||
