Table 1 |
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|
Performance in found interval percentage for the read mappers on simulated D. melanogaster reads. |
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|
Illumina 36 bp |
Illumina 50 bp |
Illumina 100 bp |
454 Ø 200 bp |
454 Ø400 bp |
|
|
|
|||||
|
Bowtie |
78.5 |
72.2 |
55.0 |
- |
- |
|
Bowtie* |
78.5 |
72.2 |
59.2 |
- |
- |
|
Bwa |
92.7 |
93.5 |
93.8 |
- |
- |
|
Shrimp2 |
90.1 |
91.1 |
92.8 |
89.7 |
92.9 |
|
Soap |
79.6 |
73.1 |
54.7 |
- |
- |
|
Soap* |
79.8 |
73.1 |
57.5 |
- |
- |
|
|
|||||
|
Data is given for mapping in edit distance mode. 454 reads were only mapped with Shrimp2. |
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|
Holtgrewe et al. BMC Bioinformatics 2011 12:210 doi:10.1186/1471-2105-12-210 |
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