Table 1

Performance in found interval percentage for the read mappers on simulated D. melanogaster reads.

Illumina

36 bp

Illumina

50 bp

Illumina

100 bp

454

Ø 200 bp

454

Ø400 bp


Bowtie

78.5

72.2

55.0

-

-

Bowtie*

78.5

72.2

59.2

-

-

Bwa

92.7

93.5

93.8

-

-

Shrimp2

90.1

91.1

92.8

89.7

92.9

Soap

79.6

73.1

54.7

-

-

Soap*

79.8

73.1

57.5

-

-


Data is given for mapping in edit distance mode. 454 reads were only mapped with Shrimp2.

Holtgrewe et al. BMC Bioinformatics 2011 12:210   doi:10.1186/1471-2105-12-210

Open Data