New methods to measure residues coevolution in proteins
1 School of Mathematical Sciences, Dalian University of Technology, 116024 Dalian, People's Republic of China
2 College of Advanced Science and Technology, Dalian University of Technology, 116024 Dalian, People's Republic of China
3 MPI-CAS Institute of Computational Biology, Chinese Academy of Sciences at Shanghai, 200031 Shanghai, People's Republic of China
4 Scientific Computing Key Laboratory of Shanghai Universities, 200234 Shanghai, People's Republic of China
5 Department of Mathematics, Shanghai Normal University, 200234 Shanghai, People's Republic of China
BMC Bioinformatics 2011, 12:206 doi:10.1186/1471-2105-12-206Published: 26 May 2011
Additional file 1:
Data sets. All MSAs used in the study are given in the file 'Additional-File-1.zip'.
Format: ZIP Size: 582KB Download file
Additional file 2:
Results. A zip file (Addtional-File-2.zip) contains all results on above data sets.
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Additional file 3:
Perl Code. A zip file (Perl-codes.zip) contains all Perl codes used in the study.
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Additional file 4:
Effects of sequence identity. The supplement material includes the comparisons of these proposed methods on different sequence identities based on the 1JXA-A family. Their corresponding JSD ranks are also shown in the material.
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