Figure 1.

Indexes for the text abbbab. (a) Suffix tree for the text abbbab, with the leaves numbered according to lexicographic order of the suffixes they represent. (b) The corresponding suffix array indicating the starting position of the sorted suffixes. (c) The equivalent BWT obtained by rotating and then sorting the text. Notice that the BWT is actually composed of only the last letter of the sorted rotations. Interestingly, this representation permits reconstructing the original text, and is also much more amenable to compression because it typically contains sequences of repeated characters. Notice, in addition, that every subtree of the suffix tree corresponds to an interval of the suffix array and, equivalently, of the BWT. In this example, the dashed boxes indicate the subtree/intervals corresponding to the suffixes that start with the common prefix b.

Fernandes et al. BMC Bioinformatics 2011 12:163   doi:10.1186/1471-2105-12-163
Download authors' original image