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PRIN: a predicted rice interactome network

Haibin Gu, Pengcheng Zhu, Yinming Jiao, Yijun Meng and Ming Chen*

Author Affiliations

Department of Bioinformatics; State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China

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BMC Bioinformatics 2011, 12:161  doi:10.1186/1471-2105-12-161

Published: 16 May 2011

Additional files

Additional file 1:

Statistics of interolog. This file contains a statistics of interolog data shown in Figure 2. Data resource from protein-protein interaction databases for 6 organisms is listed in table.

Format: XLS Size: 20KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Statistics of GOA GO Slim. This file contains a statistics of GO terms distribution based on standard UniProtKB-GOA GO Slim shown in Figure 3A and Figure 3B. Three kinds of GO terms(Cell Component, Biological Process and Molecular Function) are listed separately in table.

Format: XLS Size: 26KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

430 experiments detected rice protein interactions. This file contains 430 rice protein-protein interactions, which are integrated from BIND, IntAct, and PlaPID. Proteins are listed in RGAP locus id pairs with their RSSGO score and co-expression PCC score.

Format: XLS Size: 59KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Topological statistics of PRIN. This file contains detail data resource shown in Figure 5. Topological statistics in hubs distribution, node degree distribution, shortest path length distribution, stress centrality distribution, average clustering coefficient distribution and average neighbourhood connectivity distribution are calculated in table.

Format: XLS Size: 82KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

76,585 predicted rice protein interactions in PRIN. This file contains 76,585 rice protein-protein interactions predicted by our interolog method with high confidence. Protein description, RSSGO score, co-expression PCC score, co-localization level and interolog species are also involved in this file.

Format: CSV Size: 13.9MB Download file

Open Data