Additional file 5.

Top selected HMV features by the TCSR model. Top selected HMV features by the TCSR model. The x-axis shows the number of times in which a HMV feature has been selected as the top two predictive HMV features in 100 replicates. p and m, stand for "+" and "-" strands, respectively, followed by an index of the nucleosome, either in downstream or upstream of TSS. "avg" means the average tag number of the HMV type; "body", "1stExon", and "1stIntron" means that the calculation was performed in the entire gene body region, the first exon, and the first intron region, respectively. A, B) HMVs were selected from Set I for CpG- and nonCpG-related promoters, respectively; C, D) HMVs were selected from Set II for CpG- and nonCpG-related promoters, respectively; E, F) HMVs were selected from Set I for CpG- and nonCpG-related gene bodies, respectively; C, D) HMVs were selected from Set II for CpG- and nonCpG-related gene bodies, respectively.

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Zhang and Zhang BMC Bioinformatics 2011 12:155   doi:10.1186/1471-2105-12-155