Methods of Combination. This figure shows the five general combination scenarios used in our scripts. In each case, hit sequences A and B are consolidated into a single sequence C, which represents a section of nucleotides from the genome. We have shown combinations of overlaps, nested sequences, and sequences separated by a short, prespecified distance.
Kennedy et al. BMC Bioinformatics 2011 12:130 doi:10.1186/1471-2105-12-130