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Open Access Highly Accessed Methodology article

An automated homology-based approach for identifying transposable elements

Ryan C Kennedy12*, Maria F Unger13, Scott Christley4, Frank H Collins123 and Gregory R Madey12

Author Affiliations

1 Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN, USA

2 Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, USA

3 Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA

4 Department of Surgery, University of Chicago, Chicago, IL, USA

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BMC Bioinformatics 2011, 12:130  doi:10.1186/1471-2105-12-130

Published: 3 May 2011

Additional files

Additional file 1:

ClustalX alignment of the manually annotated mariner and the TESeeker-produced mariner, both from P. humanus humanus.

Format: PDF Size: 61KB Download file

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Open Data

Additional file 2:

ClustalX alignments of selected A. gambiae PEST non-LTR elements from TEfam and the TESeeker-produced full-length elements.

Format: PDF Size: 911KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Annotated putative D. melanogaster mariner element.

Format: PDF Size: 15KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

TESeeker User Manual.

Format: PDF Size: 1.6MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data