Table 1

Impact of gene loss (Ploss) and chromosomal inversions (Pinversion) on the performance of QUOTA-ALIGN using the simulated genomes.

Ploss = 0

Ploss = 0.3

Ploss = 0.6

Ploss = 0.9


Pinversion = 0

100.0

100.0

100.0

100.0

Pinversion = 0.005

99.6

99.5

99.3

98.6

Pinversion = 0.01

97.9

97.6

97.2

94.3

Pinversion = 0.015

95.5

94.2

90.9

89.6

Pinversion = 0.02

91.3

89.4

86.6

80.3


For each case of varying Ploss and Pinversion,, we calculate the percentage of true homolog pairs recovered by QUOTA-ALIGN (100.0 means that every homolog gene pair between the two simulated genomes is identified by QUOTA-ALIGN).

Tang et al. BMC Bioinformatics 2011 12:102   doi:10.1186/1471-2105-12-102

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