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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 11 Supplement 4

UT-ORNL-KBRIN Bioinformatics Summit 2010

Meeting abstracts

UT-ORNL-KBRIN Bioinformatics Summit 2010

Cadiz, KY, USA

19-21 March 2010

Edited by Eric C Rouchka, Robert M Flight and Claire Rinehart

Funding for the UT-ORNL-KBRIN Summit is provided in part by The Kentucky Biomedical Research Infrastructure Network (KBRIN), the University of Tennessee Molecular Resource Center, The UT-ORNL Science Alliance, The University of Tennessee Center for Integrative and Translational Genomics, and NIH grant P20RR16481.

Additional Information | Conference website

Introduction   Open Access

Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010

Eric C Rouchka, Robert M Flight, Claire Rinehart BMC Bioinformatics 2010, 11(Suppl 4):I1 (23 July 2010)

Full text | PDF | PubMed

Oral presentation   Open Access

Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia

Peilin Jia, Zhongming Zhao BMC Bioinformatics 2010, 11(Suppl 4):O1 (23 July 2010)

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Oral presentation   Open Access

Subsystems-based servers for rapid annotation of genomes and metagenomes

Ramy Aziz BMC Bioinformatics 2010, 11(Suppl 4):O2 (23 July 2010)

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Oral presentation   Open Access

Genomic analysis of a rare human tumor

Steven JM Jones, Janessa Laskin, Yvonne Y Li, Obi L Griffith, Jianghong An, Mikhail Bilenky, Yaron S Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D Morin, Trevor J Pugh, Tesa Severson, Sohrab P Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A Moore, David G Huntsman, Inanc Birol, Martin Hirst, Robert A Holt, Marco A Marra et al. BMC Bioinformatics 2010, 11(Suppl 4):O3 (23 July 2010)

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Oral presentation   Open Access

Association of genomewide newborn DNA methylation patterns with maternal and newborn characteristics

Ronald M Adkins, Julia Krushkal, Steven Zeisel, Chandrika Piyathilake, Fran Tylavsky, Grant Somes BMC Bioinformatics 2010, 11(Suppl 4):O4 (23 July 2010)

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Oral presentation   Open Access

Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics

Sudhir Naswa, Gary L Rogers, Rachel M Lynch, Stephen A Kania, Suchita Das, Elissa J Chesler, Arnold M Saxton, Brynn H Voy, Michael A Langston BMC Bioinformatics 2010, 11(Suppl 4):O5 (23 July 2010)

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Oral presentation   Open Access

Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

Robert L Hettich, Alison L Russell, Nathan C VerBerkmoes, Manesh Shah, Claire Fraser-Liggett, Janet K Jansson BMC Bioinformatics 2010, 11(Suppl 4):O6 (23 July 2010)

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Oral presentation   Open Access

High-throughput sequencing of the DBA/2J mouse genome

Xusheng Wang, Richa Agarwala, John A Capra, Zugen Chen, Deanna M Church, Daniel C Ciobanu, Zhengsheng Li, Lu Lu, Khyobeni Mozhui, Megan K Mulligan, Stanley F Nelson, Katherine S Pollard, Williams L Taylor, Donald B Thomason, Robert W Williams BMC Bioinformatics 2010, 11(Suppl 4):O7 (23 July 2010)

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Oral presentation   Open Access

Analysis of equine protein-coding gene structure and expression by RNA-sequencing

Stephen J Coleman, Zheng Zeng, Jinze Liu, James N MacLeod BMC Bioinformatics 2010, 11(Suppl 4):O8 (23 July 2010)

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Poster presentation   Open Access

Epigenetic control of signaling networks involved in interleukin-18-induced cardiac hypertrophy and its attenuation by pan-histone deacetylase inhibitors

Gipsy Majumdar, Rajendra Raghow BMC Bioinformatics 2010, 11(Suppl 4):P1 (23 July 2010)

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Poster presentation   Open Access

Identifying potential drugs that induce QT prolongation using electronic medical records

Mei Liu, Joshua C Denny, Subramani Mani, Yukun Chen, Yong Hu, Hua Xu BMC Bioinformatics 2010, 11(Suppl 4):P2 (23 July 2010)

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Poster presentation   Open Access

Molecular analysis of Trypanosoma cruzi isolates obtained from raccoons in Warren and Barren counties of Kentucky

LiPeng Bi, Chad Groce, Cheryl Davis BMC Bioinformatics 2010, 11(Suppl 4):P3 (23 July 2010)

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Poster presentation   Open Access

SNPlotz: a generic genome plot tool to aid the SNP association studies

Zhi-Liang Hu, Rex Fernando, Dorian Garrick, James M Reecy BMC Bioinformatics 2010, 11(Suppl 4):P4 (23 July 2010)

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Poster presentation   Open Access

Slim-Prim: an integrated data system for clinical and translational research

Teeradache Viangteeravat, Ian M Brooks, Somchan Vuthipadadon, Emin Kuscu, Naga Nagisetty, Ebony Smith, Ramin Homayouni, Chanchai S McDonald BMC Bioinformatics 2010, 11(Suppl 4):P5 (23 July 2010)

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Poster presentation   Open Access

Phylotree – a toolkit for computing experiments with distance-based methods for genome coevolution

Elissaveta Arnaoudova, Jerzy W Jaromczyk, Neil Moore, Christopher L Schardl, Ruriko Yoshida BMC Bioinformatics 2010, 11(Suppl 4):P6 (23 July 2010)

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Poster presentation   Open Access

Comparative functional genomic study of substrate specificity evolution of the SABATH family of methyltransferases in plants

Nan Zhao, Jean-Luc Ferrer, Xiaofeng Zhuang, Feng Chen BMC Bioinformatics 2010, 11(Suppl 4):P7 (23 July 2010)

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Poster presentation   Open Access

In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci

Ramy Aziz BMC Bioinformatics 2010, 11(Suppl 4):P8 (23 July 2010)

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Poster presentation   Open Access

Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster

Daniel Harris, Jerzy W Jaromczyk, Christopher L Schardl BMC Bioinformatics 2010, 11(Suppl 4):P9 (23 July 2010)

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Poster presentation   Open Access

WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit

Dexter Duncan, Naresh Prodduturi, Bing Zhang BMC Bioinformatics 2010, 11(Suppl 4):P10 (23 July 2010)

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Poster presentation   Open Access

Bioinformatic analysis of gene regulation in the metal-reducing bacterial family Geobacteraceae

Julia Krushkal, Ronald M Adkins, Yanhua Qu, Jeanette Peeples, Sreedhar Sontineni, Ching Leang, Peter Brown, Nelson D Young, Toshiyuki Ueki, Katy Juarez, Derek R Lovley BMC Bioinformatics 2010, 11(Suppl 4):P11 (23 July 2010)

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