BMC Bioinformatics

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This article is part of the supplement: Proceedings of the 11th Annual Bioinformatics Open Source Conference (BOSC) 2010

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Galaxy CloudMan: delivering cloud compute clusters

Enis Afgan, Dannon Baker, Nate Coraor, Brad Chapman, Anton Nekrutenko and James Taylor*

BMC Bioinformatics 2010, 11(Suppl 12):S4 doi:10.1186/1471-2105-11-S12-S4

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Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community

Konstantinos Krampis, Tim Booth, Brad Chapman, Bela Tiwari, Mesude Bicak, Dawn Field, Karen Nelson BMC Bioinformatics 2012, 13:42 (19 March 2012)

Cloud BioLinux includes over 135 pre-configured bioinformatics tools for sequence alignment, clustering, assembly, display and phylogeny, aimed at reducing costs to researchers of maintaining and configuring hardware, and encouraging sharing of codebase.

Introduction   Open Access

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Jonathan D Wren, Doris M Kupfer, Edward J Perkins, Susan Bridges, Stephen Winters-Hilt, Mikhail G Dozmorov, Ulisses Braga-Neto BMC Bioinformatics 2011, 12(Suppl 10):S1 (18 October 2011)

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CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Samuel V Angiuoli, Malcolm Matalka, Aaron Gussman, Kevin Galens, Mahesh Vangala, David R Riley, Cesar Arze, James R White, Owen White, W Florian Fricke BMC Bioinformatics 2011, 12:356 (30 August 2011)

Cloud Virtual Resource (CloVR) is a new desktop application for large-scale sequence analysis using remote computing resources that provides several automated pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis.

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The real cost of sequencing: higher than you think!

Andrea Sboner, Xinmeng Mu, Dov Greenbaum, Raymond K Auerbach, Mark B Gerstein Genome Biology 2011, 12:125 (25 August 2011)

The sharp decrease in the cost of 'data generation' has not been matched by a comparable decrease in the cost of the computational infrastructure required to mine the data

Introduction   Open Access

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

Eric C Rouchka, Robert M Flight, Ramin Homayouni BMC Bioinformatics 2011, 12(Suppl 7):A1 (5 August 2011)

Proceedings   Open Access

Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors

Cagri Ozcaglar, Amina Shabbeer, Scott Vandenberg, Bülent Yener, Kristin P Bennett BMC Genomics 2011, 12(Suppl 2):S1 (27 July 2011)