Largest community transition profile in Carboxypeptidases. The size of the largest community (of k = 3 cliques) for Carboxypeptidases, is plotted as a function of 'e'. The largest community (k = 3 cliques for PEN-8) for thermophile, 1obr (red nodes), is almost always bigger than the mesophile, 2ctc (blue nodes). The bar diagram given below is the total number of cliques for PEN-6. This shows the increased number of cliques in thermophilic proteins (except TIM and PF Kinases) at low energies. This increased clique population is clearer from Fig S5.
Vijayabaskar and Vishveshwara BMC Bioinformatics 2010 11(Suppl 1):S49 doi:10.1186/1471-2105-11-S1-S49