Table 2

The number of protein complexes, the total protein counts in complexes, and unique proteins in complexes in the gold-standard protein complex data and predicted protein complexes.

Number of Complex

Number of Protein

Number of Unique Protein

Protein Complexes

Aloy et al.

78

626

588

MIPS

199

3165

1200

Predicted Protein Complexes

CEZANNE

14

471

471

HUNTER

52

908

842

CMC(size > 2)

530

4145

1826

Core(size > 2)

434

2826

1964

The input datasets of this experiment are derived from Aloy et al. and MIPS, and are available in supplementary S10 and S11. Protein complex lists defined in these two datasets are used as gold-standard lists. The predictions based on the test interactome (supplementary S2) and the expression profile (supplementary S3) are available in supplementary S13 for the two dataset respectively.

Chin et al. BMC Bioinformatics 2010 11(Suppl 1):S25   doi:10.1186/1471-2105-11-S1-S25