LINNAEUS: A species name identification system for biomedical literature
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* Corresponding author: Casey M Bergman casey.bergman@manchester.ac.uk
BMC Bioinformatics 2010, 11:85 doi:10.1186/1471-2105-11-85
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BioMed Central: 10 citations
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Proceedings
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2012, 13(Suppl 11):S2 (26 June 2012) |
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Research article
Semantic annotation of biological concepts interplaying microbial cellular responses Rafael Carreira, Sónia Carneiro, Rui Pereira, Miguel Rocha, Isabel Rocha, Eugénio C Ferreira, Anália Lourenço BMC Bioinformatics 2011, 12:460 (28 November 2011) |
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Research
Identifying and relating biological concepts in the Catalogue of Life Andrew C Jones, Richard J White, Ewen R Orme Journal of Biomedical Semantics 2011, 2:7 (17 October 2011) The challenge of managing the variability of species names can be addressed with globally unique Life Science Identifiers (LSIDs) to map species names to abstract concepts, which should assist in data integration and interoperability in biomedicine.
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Research
An analysis of gene/protein associations at PubMed scale Sampo Pyysalo, Tomoko Ohta, Jun’ichi Tsujii Journal of Biomedical Semantics 2011, 2(Suppl 5):S5 (6 October 2011) |
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Research
Classifying protein-protein interaction articles using word and syntactic features Sun Kim, W Wilbur BMC Bioinformatics 2011, 12(Suppl 8):S9 (3 October 2011) |
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Research
Andrew Chatr-aryamontri, Andrew Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers BMC Bioinformatics 2011, 12(Suppl 8):S8 (3 October 2011) |
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Research
Overview of the BioCreative III Workshop Cecilia N Arighi, Zhiyong Lu, Martin Krallinger, Kevin B Cohen, W Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S1 (3 October 2011) |
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Software
Integrating GPCR-specific information with full text articles Bas Vroling, David Thorne, Philip McDermott, Teresa K Attwood, Gert Vriend, Steve Pettifer BMC Bioinformatics 2011, 12:362 (12 September 2011) |
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Correspondence
Toward an interactive article: integrating journals and biological databases Arun Rangarajan, Tim Schedl, Karen Yook, Juancarlos Chan, Stephen Haenel, Lolly Otis, Sharon Faelten, Tracey DePellegrin-Connelly, Ruth Isaacson, Marek S Skrzypek, Steven J Marygold, Raymund Stefancsik , J Cherry, Paul W Sternberg, Hans-Michael Müller BMC Bioinformatics 2011, 12:175 (19 May 2011) |
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Poster presentation
Species identification for gene name normalization Illés Solt, Domonkos Tikk, Ulf Leser BMC Bioinformatics 2010, 11(Suppl 5):P5 (6 October 2010) |