An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data

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Congmao Wang^†, Jie Xu^†, Dasheng Zhang, Zoe A Wilson and Dabing Zhang^*

BMC Bioinformatics 2010, 11:81 doi:10.1186/1471-2105-11-81

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Naim U Rashid, Paul G Giresi, Joseph G Ibrahim, Wei Sun, Jason D Lieb Genome Biology 2011, 12:R67 (25 July 2011)

ZINBA is a method for analyzing peaks in next generation sequencing datasets such as ChIP-seq or DNase-seq