Table 3

Run times for LAST genome alignment

Genomes

Index Construction

Alignment

G. gallus/H. sapiens

11 min

3.5 hrs

T. rupripes/H. sapiens

3.0 min

2.9 hrs

A. thaliana/O. sativa

51 sec

38 min

S. cerevisiae/S. pombe

5.8 sec

1.6 min

CPU time measured for one core of a 3 GHz Xeon E5450 processor is shown. Each alignment time is the median among 495 alignments.

Frith et al. BMC Bioinformatics 2010 11:80   doi:10.1186/1471-2105-11-80