Table 9

Baseline algorithm with skipping rules: if a SNP appears in the right hand side no less than 5 times, the SNP will not be considered as right hand side any more.

time

#tag SNPs

mem

#rules

chr19

3.66

9550

18.61 MB

461,139

chr21

8.06

7086

40.74 MB

754,084

chr22

13.5

7447

28.62 MB

755,309

The co-occurrence model is used. max_size = 3, min_r2 = 0.95.

Liu et al. BMC Bioinformatics 2010 11:66   doi:10.1186/1471-2105-11-66