Table 2

MBAT Search Workspace Data Source Plug-ins.

Source

Method & Access

Search Types

Data Types


Allen Brain Atlas (ABA)

Web API (public)

Query Term

2D Image Series

Animal Imaging Database (AIDB)

Webservice (public)

Keyword, Query Term

3D Volume

BIRN Microarray Database

Webservice (public, private)

Query Term

Probe

Cell Centered Database (CCDB)

Webservice (public)

Keyword, Query Term

2D Image

CalTech Electronic Lab Notebook

Oracle JDBC (private)

Keyword

3D Volume

GENSAT Rockefeller

SOAP (public)

Query Term

2D Image Series, Gene, Gene Expression

GENSAT (NCBI Entrez)

Web (public) API

Keyword

2D Image

Gene Network

Webservice (public)

Keyword

Gene Expression, Phenotype


Summary of the Search Workspace data source plug-ins, listing the connection method to the underlying data source, the types of search methods supported, and the data types of the returned results.

Lee et al. BMC Bioinformatics 2010 11:608   doi:10.1186/1471-2105-11-608

Open Data