Table 2

Top single-substitution patterns of length 2 by relative abundance

Pattern

Rel. abund.

95% Conf. Int.


1. CG→TG (CG→CA)

7.5809

7.5581 - 7.6049

2. CG→CT (CG→AG)

2.2765

2.2495 - 2.3054

3. CG→GG (CG→CC)

1.9887

1.9605 - 2.0182

4. AT→GT (AT→AC)

1.5444

1.5401 - 1.5492

5. TG→CG (CA→CG)

1.3861

1.3816 - 1.3906

6. AT→TT (AT→AA)

1.3335

1.3244 - 1.3433

7. TA→TT (TA→AA)

1.2402

1.2297 - 1.2504

8. TG→GG (CA→CC)

1.2087

1.1999 - 1.2166

9. GT→TT (AC→AA)

1.2006

1.1920 - 1.2093

10. GT→AT (AC→AT)

1.1903

1.1868 - 1.1943

11. TC→TG (GA→CA)

1.1358

1.1279 - 1.1433

12. TT→TG (AA→CA)

1.1141

1.1073 - 1.1212

13. TA→TG (TA→CA)

1.0990

1.0942 - 1.1039

14. CT→GT (AG→AC)

1.0969

1.0904 - 1.1033

15. GT→CT (AC→AG)

1.0895

1.0816 - 1.0978


Nevarez et al. BMC Bioinformatics 2010 11:462   doi:10.1186/1471-2105-11-462

Open Data