Additional file 9.

Region of NFκ B fixation site. The complete alignment, part of which is featured in Fig. 4. This figure corresponds to the figure in Additional File 8. The colours are the same as in the figure in Additional File 8 but in this figure the MS4 identifier has been simplified as follows: we have just indicated the letter and the value of N. Therefore it can be that two different MS4 classes that lie on the same column, with the same letter and the same N value are only distinguished by their colour (e.g. A18 and also T18 HIV-1-M/G, that are red or green).

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Corel et al. BMC Bioinformatics 2010 11:406   doi:10.1186/1471-2105-11-406