Table 2 |
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|
Key Features |
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|
Feature |
Details |
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|
|
|
Supported CNV File Formats |
Affymetrix Genotyping Console |
|
Microsoft Excel |
|
|
Comma Separated Values |
|
|
Supported SNP Arrays |
Affymetrix SNP Array 500K |
|
Supported Phenotype File Formats |
Microsoft Excel |
|
Comma Separated Values |
|
|
Supported Genotype File Formats |
Affymetrix SNP 500K .call files |
|
|
|
|
Algorithms |
Genome-wide CNVR-determination |
|
Genome-wide CNV-phenotype association analysis |
|
|
|
|
|
Visualization |
Interactive Manhattan Plot with automatically drawn Bonferroni-threshold line |
|
Visualization of the distribution of detected CNV regions on each chromosome |
|
|
Exporting of all visualizations as PNG and JPEG images |
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|
|
|
|
Analysis |
Filtering and searching of statistical results |
|
Highlighting of genome-wide significant results |
|
|
Highlighting of regions which fit with results from the GWAS database |
|
|
Exporting of all results as Microsoft Excel or CSV-Files |
|
|
Direct links to entries in public databases: |
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|
UCSC Genome Browser, NCBI dbSNP, Ensembl, HapMap |
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|
|
|
|
Forer et al. BMC Bioinformatics 2010 11:318 doi:10.1186/1471-2105-11-318 |
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