Open Access Database

TassDB2 - A comprehensive database of subtle alternative splicing events

Rileen Sinha12, Thorsten Lenser3, Niels Jahn2, Ulrike Gausmann2, Swetlana Friedel4, Karol Szafranski2, Klaus Huse2, Philip Rosenstiel5, Jochen Hampe6, Stefan Schuster7, Michael Hiller8, Rolf Backofen1109 and Matthias Platzer2*

Author Affiliations

1 Bioinformatics group, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany

2 Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Beutenbergstr. 11, 07745 Jena, Germany

3 Bio Systems Analysis Group, Friedrich Schiller University Jena, Ernst-Abbe-Platz 1-4, D-07743 Jena, Germany

4 Leibniz Institute for Natural Product Research and Infection Biology, Hans-Knöll-Institute, Systems Biology/Bioinformatics, Beutenbergstrasse. 11a, 07745 Jena, Germany

5 Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse, 12, 24105 Kiel, Germany

6 Department of General Internal Medicine, University Hospital Schleswig-Holstein, Campus Kiel, Schittenhelmstrasse, 12, 24105 Kiel, Germany

7 Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany

8 Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA

9 Freiburg Initiative for Systems Biology (FRISYS), University of Freiburg, Schaenzlestrasse 1, 79104 Freiburg, Germany

10 Centre for Biological Signalling Studies (bioss), University of Freiburg, Albertstr. 19, 79104 Freiburg, Germany

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BMC Bioinformatics 2010, 11:216  doi:10.1186/1471-2105-11-216

Published: 29 April 2010

Additional files

Additional file 1:

The abundance of subtle AS events in some AS databases. Plots comparing the number of human subtle AS events in TassDB2, ASTD, and the alternative splicing track of the UCSC genome browser.

Format: DOC Size: 36KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 2:

Confirmed subtle AS events in Human. All subtle AS events in Human with at least 1 EST/mRNA per splice variant.

Format: GZ Size: 7.4MB Download file

Open Data

Additional file 3:

Confirmed subtle AS events in Mouse. All subtle AS events in Mouse with at least 1 EST/mRNA per splice variant.

Format: GZ Size: 7.2MB Download file

Open Data