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Open Access Highly Accessed Research article

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis

Jens Keilwagen1*, Jan Grau2, Stefan Posch2 and Ivo Grosse12

Author Affiliations

1 Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany

2 Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle/Saale, Germany

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BMC Bioinformatics 2010, 11:149  doi:10.1186/1471-2105-11-149

Published: 22 March 2010

Additional files

Additional file 1:

Appendices. This file contains more information about the partial normalization constants, the computation of the Jacobian, and a general prior for moral Bayesian networks.

Format: PDF Size: 70KB Download file

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Additional file 2:

Results of the Sp1 case study. This file contains all results of the Sp1 case study including for all combinations of Markov models. For the foreground class we use orders 0 or 1, and for the background class we use orders 0 to 3.

Format: PDF Size: 161KB Download file

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Open Data