Figure 5.

Log-likelihood evolution during S-EM training. Each column shows the evolution of the log-likelihood for one of the three benchmarks described in the results section. The training procedure was started from two different random seeds (indicated by a solid and a dashed line). The log-likelihood values, log P (D|Hn, θn), used in the upper figures are conditional on the states of the sampled hidden nodes (θn are the parameter values at iteration n, Hn are the hidden node values at iteration n and D is the observed data). The log-likelihood values in the lower figures, log P (D|θn), are computed by summing over all hidden node sequences using the forward algorithm [5]. Note that the forward algorithm can only be used on HMMs and is therefore not applied on the complex benchmark.

Paluszewski and Hamelryck BMC Bioinformatics 2010 11:126   doi:10.1186/1471-2105-11-126
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