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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 10 Supplement 7

UT-ORNL-KBRIN Bioinformatics Summit 2009

Meeting abstracts

UT-ORNL-KBRIN Bioinformatics Summit 2009

Pikeville, TN, USA

20-22 March 2009

Edited by Eric C Rouchka and Julia Krushkal

Additional Information | Conference website

Meeting abstract   Open Access

Prediction of peptide drift time in ion mobility-mass spectrometry

Bing Wang, Steve Valentine, Sriram Raghuraman, Manolo Plasencia, Xiang Zhang BMC Bioinformatics 2009, 10(Suppl 7):A1 (25 June 2009)

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Meeting abstract   Open Access

Fuzzy rule based unsupervised approach for gene saliency

Nishchal K Verma, Pooja Agrawal, Yan Cui BMC Bioinformatics 2009, 10(Suppl 7):A2 (25 June 2009)

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Meeting abstract   Open Access

Parallelized pairwise sequence alignment using CUDA on multiple GPUs

Sungbo Jung BMC Bioinformatics 2009, 10(Suppl 7):A3 (25 June 2009)

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Meeting abstract   Open Access

Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports

Elissaveta G Arnaoudova, Philip J Bowens, Roger G Chui, Randy D Dinkins, Uljana Hesse, Jerzy W Jaromczyk, Mitchell Martin, Paul Maynard, Neil Moore, Chris L Schardl BMC Bioinformatics 2009, 10(Suppl 7):A4 (25 June 2009)

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Meeting abstract   Open Access

LSI based framework to predict gene regulatory information

Sujoy Roy, Lijing Xu, Ramin Homayouni BMC Bioinformatics 2009, 10(Suppl 7):A5 (25 June 2009)

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Meeting abstract   Open Access

A systematic study on latent semantic analysis model parameters for mining biomedical literature

Mohammed Yeasin, Haritha Malempati, Ramin Homayouni, Mohammad Sorower BMC Bioinformatics 2009, 10(Suppl 7):A6 (25 June 2009)

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Meeting abstract   Open Access

Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation

Ramy K Aziz, Leslie K Mcneil BMC Bioinformatics 2009, 10(Suppl 7):A7 (25 June 2009)

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Meeting abstract   Open Access

Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology

Heba M Amin, Abdel-Gawad M Hashem, Ramy K Aziz BMC Bioinformatics 2009, 10(Suppl 7):A8 (25 June 2009)

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Meeting abstract   Open Access

Bioinformatic analysis of gene regulation in Geobacter sulfurreducens

Julia Krushkal, Yanhua Qu, Peter Brown, Sreedhar Sontineni, Toshiyuki Ueki, Katy Juarez, Ching Leang, Enrique Merino, Jeanette Peeples, Jose F Barbe, Ronald M Adkins, Derek R Lovley BMC Bioinformatics 2009, 10(Suppl 7):A9 (25 June 2009)

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Meeting abstract   Open Access

Comparison of annotation terms between automated and curated E. coli K12 databases

ReddySailaja Marpuri, Claire A Rinehart BMC Bioinformatics 2009, 10(Suppl 7):A10 (25 June 2009)

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Meeting abstract   Open Access

Slim-Prim: an integrated data system for clinical and translational research

Teeradache Viangteeravat, Ian Brooks, Somchan Vuthipadadon, Eunice Huang, Ebony Smith, Ramin Homayouni, Chanchai McDonald BMC Bioinformatics 2009, 10(Suppl 7):A11 (25 June 2009)

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Meeting abstract   Open Access

Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)

Julie B Schuck, Chia-Hui Lin, William T Penberthy, Xiaohong Li, Nigel GF Cooper, Michael E Smith BMC Bioinformatics 2009, 10(Suppl 7):A12 (25 June 2009)

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Meeting abstract   Open Access

Extensive parent-of-origin genetic effects on fetal growth

Ronald M Adkins, Julia Krushkal, Grant Somes, John Fain, John Morrison, Chad Klauser, Everett F Magann BMC Bioinformatics 2009, 10(Suppl 7):A13 (25 June 2009)

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Meeting abstract   Open Access

Molecular dissection of cardiac hypertrophy induced by interleukin-18

Sirshendu Majumdar, I Maria Johnson, Gipsy Majumdar, William J Valentine, Rajendra Raghow BMC Bioinformatics 2009, 10(Suppl 7):A14 (25 June 2009)

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Meeting abstract   Open Access

Transcriptional profiling of CD4 T-lymphocytes reveals abnormal gene expression in young prediabetic NOD mice

Dorothy N Kakoola, Nataliya I Lenchik, Anita Curcio-Brint, Ivan C Gerling BMC Bioinformatics 2009, 10(Suppl 7):A15 (25 June 2009)

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Meeting abstract   Open Access

Utilizing a mixed model approach to compare the lactating rat transcriptome against age-matched control virgins

Antony T Athippozhy, Liping Huang, Tianyong Zhao, Clavia Wooton-Kee, Paiboon Jungsuwadee, Arnold J Stromberg, Mary Vore BMC Bioinformatics 2009, 10(Suppl 7):A16 (25 June 2009)

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Meeting abstract   Open Access

Motif Tool Manager: a web-based platform for motif discovery

Vinhthuy Phan BMC Bioinformatics 2009, 10(Suppl 7):A17 (25 June 2009)

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Meeting abstract   Open Access

Flipping NextGen: using biological systems to characterize NextGen sequencing technologies

Jarret Glasscock, Ryan Richt, Matt Hickenbotham BMC Bioinformatics 2009, 10(Suppl 7):A18 (25 June 2009)

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Meeting report   Open Access

Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009

Eric C Rouchka, Julia Krushkal BMC Bioinformatics 2009, 10(Suppl 7):I1 (25 June 2009)

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