Table 1

A similar peptide example.

Similar Peptide: MYSKILL


Protein Source

Localization Sites

Native Peptide Sequence

Similarity Level

Frequency


A

Cytoplasm

MYKKILY

5

21

B

Nuclear

MYSSIIL

4

12

C

Cytoplasm Extracellular

MYSSILY

5

17


Three protein sources with known localization sites contain peptides that are aligned and similar to the peptide MYSKILL in their HSPs. The similarity level indicates the number of amino acid pairs that are interchangeable between the native peptide sequence and the similar peptide sequence. The frequency represents the number of occurrences they are aligned in HSPs.

Lin et al. BMC Bioinformatics 2009 10(Suppl 15):S8   doi:10.1186/1471-2105-10-S15-S8

Open Data