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This article is part of the supplement: Eighth International Conference on Bioinformatics (InCoB2009): Bioinformatics

Open Access Proceedings

Gevab: a prototype genome variation analysis browsing server

Woo-Yeon Kim1, Sang-Yoon Kim1, Tae-Hyung Kim1, Sung-Min Ahn23, Ha Na Byun1, Deokhoon Kim2, Dae-Soo Kim1, Yong Seok Lee1, Ho Ghang1, Daeui Park1, Byoung-Chul Kim1, Chulhong Kim1, Sunghoon Lee1, Seong-Jin Kim2* and Jong Bhak1*

Author Affiliations

1 Korean BioInformation Center (KOBIC), KRIBB, Daejeon, Korea

2 Lee Gil Ya Cancer and Diabetes Institute, Gachon University of Medicine and Science, Incheon, Korea

3 Department of Translational Medicine, Gachon University Gil Hospital, Incheon, Korea

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BMC Bioinformatics 2009, 10(Suppl 15):S3  doi:10.1186/1471-2105-10-S15-S3

Published: 3 December 2009

Abstract

Background

The first Korean individual diploid genome sequence data (KOREF) was publicized in December 2008.

Results

A Korean genome variation analysis and browsing server (Gevab) was constructed as a database and web server for the exploration and downloading of Korean personal genome(s). Information in the Gevab includes SNPs, short indels, and structural variation (SV) and comparison analysis between the NCBI human reference and the Korean genome(s). The user can find information on assembled consensus sequences, sequenced short reads, genetic variations, and relationships between genotype and phenotypes.

Conclusion

This server is openly and publicly available online at http://koreagenome.org/en/ webcite or directly http://gevab.org webcite.