This article is part of the supplement: Proceedings of the Sixth Annual MCBIOS Conference. Transformational Bioinformatics: Delivering Value from Genomes
Proceedings
HPD: an online integrated human pathway database enabling systems biology studies
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* Corresponding author: Jake Y Chen jakechen@iupui.edu
- † Equal contributors
1 Indiana University School of Informatics, Indianapolis, IN 46202, USA
2 Indiana Center for Systems Biology and Personalized Medicine, Indiana University – Purdue University, Indianapolis, IN 46202, USA
3 Department of Computer and Information Science, Purdue University School of Science, Indianapolis, IN 46202, USA
BMC Bioinformatics 2009, 10(Suppl 11):S5 doi:10.1186/1471-2105-10-S11-S5
Published: 8 October 2009Additional files
Additional file 1:
This additional file lists top 100 pathways ranked by degree (number of neighbour pathways, with which similarity score > 0); top 100 genes/proteins ranked by frequency, and top 100 compounds ranked by frequency. Here the frequency of a molecule entity (i.e. gene/protein or compound) also includes times appearing in same pathways.
Format: DOC Size: 67KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 2:
This additional file describes the pathway entity-relationship (ER) data model for HPD pathway integrations in detail.
Format: XLS Size: 45KB Download file
This file can be viewed with: Microsoft Excel Viewer