Table 2

Comparison with BioCreative II best result.

Precision

Recall

F-Score


BioCreative II Best Run

0.506

0.522

0.483


CMW model

0.654

0.545

0.543


improvement

+29.2%

+4.4%

+12.4%


We operate the CMW model on the BioCreative II testing corpus (300 full text documents) to compare with the best result reported in the evaluation. We set the topic size to be 300 according to the result in Figure 5. The CMW model achieved competitive results, F-Score improved 12.4%.

Wang et al. BMC Bioinformatics 2009 10(Suppl 1):S55   doi:10.1186/1471-2105-10-S1-S55

Open Data