Table 3

Detailed information of the novel ncRNA candidates in group I.

Genome Location

Name

Chr.

Intergenic Region

Start

End

Strand

Len.


SEQ1

1

AT1G28750–AT1G28770

10091146

10091292

W

147

SEQ2

1

AT1G30972–AT1G30974

11046502

11046670

W

169

SEQ3

1

AT1G43620–AT1G43630

16433517

16433593

W

77

SEQ4

1

AT1G54890–AT1G54905

20470604

20470753

C

150

SEQ5a

2

AT2G01020–AT2G01022

6084

6646

C

563

SEQ6a

2

AT2G01020–AT2G01022

6708

7257

C

550

SEQ7a#,†

2

AT2G01020–AT2G01022

7288

8699

C

1412

SEQ8a

2

AT2G01020–AT2G01022

8889

9367

C

479

SEQ9W

2

AT2G07590–AT2G07600

3187035

3187217

W

183

SEQ9C*,#

2

AT2G07590–AT2G07600

3187035

3187217

C

183

SEQ10W

2

AT2G07689–AT2G07691

3338151

3338560

W

410

SEQ10C

2

AT2G07689–AT2G07691

3338151

3338560

C

410

SEQ11C

2

AT2G07732–AT2G07733

3469569

3469970

C

402

SEQ11W*

2

AT2G07732–AT2G07733

3469611

3470020

W

410

SEQ12W

2

AT2G09880–AT2G09890

3747858

3748031

W

174

SEQ12C*,‡

2

AT2G09880–AT2G09890

3747858

3748031

C

174

SEQ13

2

AT2G12420–AT2G12430

5036416

5036560

C

145

SEQ5b

3

AT3G41979–AT3G42050

14211041

14211603

C

563

SEQ6b

3

AT3G41979–AT3G42050

14211665

14212214

C

550

SEQ7b#,†

3

AT3G41979–AT3G42050

14212350

14213656

C

1307

SEQ8b

3

AT3G41979–AT3G42050

14213846

14214324

C

479

SEQ14

3

AT3G42803–AT3G42806

14923566

14923707

W

142

SEQ15

5

AT5G09960–AT5G09970

3111082

3111016

W

67

SEQ16

5

AT5G29805–AT5G29890

11327943

11328007

W

65

SEQ17

5

AT5G32410–AT5G32420

12042758

12042828

C

71

SEQ18a

5

AT5G34358–AT5G34376

12842957

12843077

W

121

SEQ18b

5

AT5G34412–AT5G34431

12885676

12885796

W

121


The three sequences marked by * are not expressed in the bi-directional RT-PCR analysis of the inflorescence tissue. The three sequences marked by # may code for proteins. The sequences marked by † were annotated as LSU-rRNA Ath by RepeatMasker. The sequences marked by ‡ were annotated as LTR by RepeatMasker. The sequences marked by ♭ were annotated as DNA transposons by RepeatMasker.

Song et al. BMC Bioinformatics 2009 10(Suppl 1):S36   doi:10.1186/1471-2105-10-S1-S36

Open Data