Table 1

Motif associated with histological grades or prognosis identified based on independent datasets

Module ID

Size

Z score

The most enriched GO

P value for the most enriched GO

Z score for nearest neighbor pair

Z score for nearest or next to nearest pairs

ETS

47

10.0

immune response

4.55 × 10^-15

10.9

9.85

IRF

47

7.59

immune response

6.19 × 10^-12

N.S.

3.69

E2F

37

6.67

cell cycle

1.98 × 10^-20

32.5

24.5

RUNX

34

5.57

immune response

2.57 × 10^-11

12.1

6.08

NFY

30

4.22

cell cycle

9.48 × 10^-14

15.4

12.3

NFκB

29

9.53

immune response

1.51 × 10^-7

17.9

4.65

ER

17

9.45

-

-

N.S.

N.S.

PRC2

61

5.87

multicellar organismal development

4.90 × 10^-7

N.S.

5.07

8q24

10

7.80

-

-

N.S.

N.S.

17q12

11

7.78

-

-

N.S.

N.S.

N.S. denotes 'not significant'.

Niida et al. BMC Bioinformatics 2009 10:71   doi:10.1186/1471-2105-10-71