Additional file 1:

Motif sub-category definitions. The file contains the output of an SQL query to list the whole of the MotifDescription Table (Additional file 2). It should be viewed in a mono-spaced font such as Courier. The description of the attributes for this entity are included in Additional file 3.

Format: TXT Size: 7KB Download file

Additional file 2:

Schema of the Protein Motif Database underlying the Motivated Proteins web application. This file shows a standard entity-relationship diagram of the main entities in the database, excluding views and entities related to CATH classification and Keywords. Primary entities (those with attributes derived directly by processing information in PDB files) are in claret (darker). Entities derived by querying the primary entities and their relationships are in green (brighter).

Format: PDF Size: 243KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 3:

Entities in the Protein Motif Database. This file contains the output of SQL queries to describe the database and the entities in tabular form. It should be viewed in a mono-spaced font such as Courier. The listing also includes tables for views and minor entities not included in the diagram in Additional file 2.

Format: TXT Size: 11KB Download file

Additional file 4:

Proteins in the Protein Motif Database. This file lists the PDB identifiers of the 429 proteins in the Protein Motif Database. The twelve entries not derived from the Richardson 'Top 500' are indicated.

Format: TXT Size: 6KB Download file

Additional file 5:

SQL queries to retrieve motifs from protein data in the database. This is a zipped directory containing 48 plain text files of SQL queries for the different sub-categories of motif used to populate the Protein Motif Database.

Format: ZIP Size: 78KB Download file