Additional file 1.

This file consists of four parts. The first part contains the background knowledge, the parameter settings and the definition of hypotheses space for the ILP system used in this study. The second part contains a figure that shows Saccharomyces phylogeny. The third part gives a short description of microarray data analysis. The last part lists the predicted functional uORFs including eleven that our analysis suggests to be strong candidates for wet-lab experimental studies.

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Selpi et al. BMC Bioinformatics 2009 10:451   doi:10.1186/1471-2105-10-451