Correlation of each of the 14 features with nucleosome occupancy. (A) Graphic illustration of the correlation of each of the 14 sequence features with nucleosome occupancy in vitro and in vivo across the yeast genome (data from Kaplan et al.). (B-D) Scatter plots showing performance of linear models on test set using only G+C content (B), AAAA occurrence (C), or both (D) as inputs. (E) Kaplan model score vs. proportion of G+C over all 150 bp tiling windows in the yeast genome.
Tillo and Hughes BMC Bioinformatics 2009 10:442 doi:10.1186/1471-2105-10-442