Additional file 1.
Eight tables list the command-line application options, as well as their types, default values, and a short explanation. The first table has information common to the search applications blastn, blastp, blastx, tblastn, and tblastx. The next five tables describe options for those applications. The last two tables list the options for makeblastdb (used to build a blast database) and blastdbcmd (used to read a database).
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Camacho et al. BMC Bioinformatics 2009 10:421 doi:10.1186/1471-2105-10-421