Table 5

Experimental results of the GENIA subcategory annotations plus AIMed and GENETAG, respectively

No.

Data

Criterion

Precision

Recall

F-score

1

AIMed+ molecule+ subunit

Exact

81.69

66.67

73.42

Partial

91.39

74.58

82.14

AIMed+ molecule+ subunit+ complex

Exact

77.78

66.16

71.50

Partial

91.14

77.52

83.78

AIMed+ molecule+ subunit+ complex+ domain

Exact

76.45

67.18

71.52

Partial

89.39

78.54

83.62

2

GENETAG+ molecule+ family

Exact

71.08

55.03

62.03

Partial

87.40

67.66

76.27

GENETAG+ molecule+ family+ subunit+ complex+ domain

Exact

69.90

58.28

63.56

Partial

85.30

71.11

77.56

3

AIMed+ DNA

Exact

75.69

41.76

53.83

Partial

87.96

48.53

62.55

AIMed+ filtered DNA

Exact

80.48

42.66

55.76

Partial

92.29

48.91

63.94

4

GENETAG+ DNA

Exact

69.82

36.44

47.89

Partial

83.97

43.82

57.59

GENETAG+ filtered DNA

Exact

76.57

35.18

48.21

Partial

92.70

42.60

58.38

5

AIMed+ molecule+ subunit+ complex+ filtered DNA

Exact

77.49

67.69

72.26

Partial

91.37

79.82

85.21

AIMed+ molecule+ subunit+ complex+ domain+ filtered DNA

Exact

75.78

68.33

71.86

Partial

89.09

80.33

84.49

GENETAG+ molecule+ family+ subunit+ complex+ domain+ filtered DNA

Exact

70.97

66.14

68.47

Partial

85.14

79.34

82.14

GENETAG+ molecule+ family+ subunit+ complex+ domain+ filtered DNA+ RNA

Exact

71.34

67.02

69.11

Partial

84.82

79.68

82.17

6

pure AIMed

Exact

80.44

75.10

77.68

Partial

88.24

82.38

85.20

AIMed + GENIA Protein

Exact

65.06

67.31

66.16

Partial

78.89

81.61

80.23

7

pure GENETAG

Exact

71.38

68.00

69.65

Partial

86.21

82.12

84.11

GENETAG + GENIA Protein

Exact

69.75

58.48

63.62

Partial

84.77

71.08

77.33

Here, DNA represents the GENIA DNA_domain_or_region and RNA represents the GENIA RNA_molecule.

Wang et al. BMC Bioinformatics 2009 10:403   doi:10.1186/1471-2105-10-403