Table 1 |
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|
BP score improvement over the input datasets. |
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|
Species |
CAPPI-Integ |
CAPPI-Integ-3sp |
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|
|
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|
Data Size |
Input Score |
Output Score |
Wilcoxon p-value |
Data Size |
Input Score |
Output Score |
Wilcoxon p-value |
|
|
|
||||||||
|
Yeast |
28590 |
0.377 |
0.412 |
1.21e-31 |
1890 |
0.320 |
0.381 |
8.03e-06 |
|
|
||||||||
|
Fly |
12107 |
0.295 |
0.425 |
1.26e-113 |
4049 |
0.255 |
0.303 |
4.78e-05 |
|
|
||||||||
|
Worm |
2604 |
0.364 |
0.469 |
1.50e-21 |
856 |
0.374 |
0.485 |
2.02e-09 |
|
|
||||||||
|
Arabidopsis |
1349 |
0.596 |
0.623 |
0.02 |
NA |
|||
|
|
||||||||
|
Rat |
1271 |
0.296 |
0.384 |
9.07e-06 |
NA |
|||
|
|
||||||||
|
Mouse |
2456 |
0.417 |
0.463 |
1.53e-06 |
NA |
|||
|
|
||||||||
|
Human |
17672 |
0.353 |
0.395 |
1.38e-31 |
NA |
|||
|
|
||||||||
|
The mean BP score of the input dataset and the inferred dataset of the same size are given for CAPPI-Integ and CAPPI-Integ-3sp. In all cases the inferred interaction set receives a significantly higher score than its input counterpart. |
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|
Dutkowski and Tiuryn BMC Bioinformatics 2009 10:393 doi:10.1186/1471-2105-10-393 |
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