Table 3

Number and percentage of true and random motifs assigned to each bin by the different score types

Score type

bin

TM

%TM

random

%random

ratio


Qacc

sparse

24

15.19

8835

40.05

0.3793


neutral

86

54.43

11106

50.34

1.0812


enriched

48

30.38

2119

9.61

3.1613


Qsse

sparse

33

20.89

8910

40.39

0.5172


neutral

30

18.99

6004

27.22

0.6976


enriched

95

60.13

7146

32.39

1.8564


Qand

sparse

26

16.46

8821

39.99

0.4116


neutral

84

53.16

11263

51.06

1.0411


enriched

48

30.38

1976

8.96

3.3906


Score type: can be based on accessibility (Qacc) only, on secondary structure only (Qsse) or on a combination of them (Qand = Qacc + Qsse); TM (random): number of sparse/neutral/enriched true motif (random) matches; %TM (%random): percentage of sparse/neutral/enriched true motif (random) matches; ratio: %TM/%random. The scoring scheme implemented both in the Web Server and in the Web Service is marked in bold.

Via et al. BMC Bioinformatics 2009 10:351   doi:10.1186/1471-2105-10-351

Open Data