Table 1

Frequency of secondary structure elements in true and in random motifs

loop

3/10 helix

helix

strand


νTM

0.72

0.04

0.18

0.06


ν Random

0.48

0.03

0.33

0.17


νTM/νRandom

qsse(i)

1.50

1.33

0.55

0.35


The table reports the secondary structure type frequencies observed in motifs of the benchmark and random datasets calculated considering only non-wildcard positions. νTM: frequency in the true motif instance dataset; νRandom: frequency in the random match dataset; qsse(i) = secondary structure score of position i.

Via et al. BMC Bioinformatics 2009 10:351   doi:10.1186/1471-2105-10-351

Open Data