Additional file 1.

Supplementary information, details and examples. Results for true motifs and random matches taking into account all motif positions (non-wildcard + wildcard). The tables therein reported correspond to tables 1, 2, 3, 4 of the main manuscript. Moreover it describes how neglecting motif wildcard positions improved the initial benchmark set and reports the results of the manual analysis of ten nearly buried instances.

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Via et al. BMC Bioinformatics 2009 10:351   doi:10.1186/1471-2105-10-351