Table 4 |
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|
Comparison of GO annotations for RAST and GRC. |
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|
RAST GO-Based Comparison |
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|
|
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|
ID |
TP-Verifiable |
Term Confirm. |
Term Compat. |
Term Incompat. |
Avg.Con.Depth |
Avg.Com.Depth |
|
|
||||||
|
RAST W3110 |
1354 |
1995 |
136 |
123 |
4.3 |
5.21 |
|
RAST syrDC3000 |
1225 |
1701 |
258 |
141 |
4.18 |
5.37 |
|
GRC W3110 |
2620 |
12913 |
271 |
302 |
3.84 |
4.81 |
|
GRC syrDC3000 |
2791 |
12002 |
254 |
253 |
3.8 |
4.59 |
|
|
||||||
|
The performance in making GO annotations for RAST and GRC. The number of true positives that have GO terms for the reference and the called gene are TP-verifiable. The number of GO terms found to be confirmed, compatible, and incompatible and the average depth for those terms. |
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|
Warren and Setubal BMC Bioinformatics 2009 10:35 doi:10.1186/1471-2105-10-35 |
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